Wir bitten um Entschuldigung
Die Inhalte dieser Seite sind leider nicht in Deutsch verfügbar.
Open Source Software
Members of the CRC already use and actively contribute to the following Open Source projects as part of their research
Current projects:
- Berkeley Advanced Reconstruction Toolbox for computational MRI (M. Uecker, main author) [Zenodo]
- Netgen/NGSolve high performance finite element library (C. Lehrenfeld) [Homepage]
- ProxToolbox nonlinear optimization toolbox (R. Luke, main author) [Homepage]
- GROMACS molecular dynamics project (H. Grubmüller and B. L. de Groot) [Homepage]
- Transport R package for optimal transport (B. Schmitzer) [Homepage]
- Otinference R package for inference for optimal transport (A. Munk) [Homepage]
- MultiScaleOT numerical optimal transport library (B. Schmitzer, main author) [Github]
- regpy Python package for inverse problems (T. Hohage, C. Lehrenfeld, C. Rügge, M.Uecker) [Github]
- HoloTomoToolbox Matlab toolbox for holographic tomography (T. Salditt) [Github]
- Snip - Digital Labbook (M. Osterhoff) [Gitlab]
- NeuralPredictors, a library for predicting neuronal responses (F. Sinz) [Github]
- A library for computing Most Exciting Images for neurons (F. Sinz) [Github]
- NNFabrik a library for automating large scale model training for neuroscience and beyond (F. Sinz) [Github]
- ART-MOKE: Simulation and Analysis Tools for Angle-Resolved Transverse Magneto-Optical Kerr Effect Spectroscopy (M. Jansen) [Dataverse]
- De novo Structural Ensemble Determination from Single Molecule X-ray Scattering using a Bayesian Approach (H. Grubmüller) [Gitlab]
- Linearized optimal transport toolbox for Python (B. Schmitzer) [Gitlab]
- MultiMatch package for colocalization analysis of chain-like structures (G. Nies) [Gitlab]
- SimSpec (A. Kehl, H. Wiechers, M. Bennati and Y. Pokern) [Dataverse]
- Sensorium Competition for benchmarking predictive models of the brain (A. Ecker, F. Sinz) [Homepage, Github]
- MuSink (G. Mordant, T. Staudt) [Gitlab]
Former projects:
- DataJoint framework for scientific databases and data pipelines (A. Ecker) [Homepage]
- FDRSeg R package for estimation of step functions (H. Li, main author) [Homepage]